Publications and Conference Proceedings
2015 2014   2013   2012   2011   2010   2009   2008   2007   2006   2005
Patents
Technical Reports
Invited Talks

For more information regarding publications, visit my Google Scholar page.

Publications and Conference Proceedings
2015

A. Randles, E.W. Draeger, T. Oppelstrup, L. Krauss, and J.A. Gunnels. "Massively Parallel Models of the Human Circulatory System". Proceedings of the 2015 ACM/IEEE International Conference for High Performance Computing, Networking, Storage, and Analysis (SC15), Denver, CO. Gordon Bell Finalist. (accepted)

A. Randles, E.W. Draeger, and P.E. Bailey. "Massively Parallel Simulations of Hemodynamics in the Human Vasculature". Journal of Computational Science 9 (2015): 70-75. Best Paper Award at IEEE International Conference on Computational Science (ICCS 2015).

2014

A. Randles and L. Zeger. "Capture Diversity to Speed RFID". (submitted).

H.D. Whitley, Ch.R. Scullard, L.X. Benedict, J.I. Castor,  A. Randles, J.N. Glosli, D.F. Richards, M.P. Desjarlais, and F.R. Graziani. “Lenard-Balescu Calculations and Classical Molecular Dynamics Simulations of Electrical and Thermal Conductivities of Hydrogen Plasmas.” Contributions to Plasma Physics. (accepted).

Y. You, H. Fu, S. Song, A. Randles, D. Kerbyson, A. Marquez, G. Yang, and A. Hoisie, "Scaling Support Vector Machines on modern HPC platforms". Journal of Parallel and Distributed Computing. (accepted).

A. Randles,  E. Draeger, and F. Michor, "Investigation of Spatio-Temporal Coupling Applied to Computational Models of Virtual Surgery". Biomedical Engineering Society (BMES) Annual Meeting, 2014.

V. Kale, A. Randles, and W. Gropp. "Locality Optimizations for Load Balancing on SMPs". Proceedings of the 21st European MPI Users' Group Meeting. ACM, 2014. Poster paper.

A. Randles, M. Driscoll, E. Draeger, and F. Michor, "A Feasibility Study using Image-based Parallel Modeling for Treatment Planning". Computing in Cardiology Conference (CinC), 2014. Young Investigator Award Honorable Mention.

A. Randles, and E. Kaxiras, "A Parallel-in-time Method Applied to Lattice Boltzmann Simulations of Cardiovascular Flow".  23rd International Conference on Discrete Simulation of Fluid Dynamics (DSFD 2014), Paris, France, July 28 - August 1, 2014.

A. Randles, and E. Kaxiras, "A Spatio-Temporal Coupling Method to Reduce the Time-to-Solution of Cardiovascular Simulations". Proceedings of the 28th IEEE International Parallel and Distributed Processing Symposium, IPDPS14, 2014. PDF.

Y. You, S.L. Song, H. Fu, A. Marquez, G. Yang, K. Barker, K.W. Cameron, M. Mehri Dehnavi, and A. Peters Randles, "MIC-SVM: Designing A Highly Efficient Support Vector Machine For Advanced Modern Multi-Core and Many-Core Architectures".  Proceedings of the 28th IEEE International Parallel and Distributed Processing Symposium, IPDPS14, 2014. PDF.

 A. Randles, M. Driscoll, E. Draeger, and F. Michor. “Massively Parallel Model of Cardiovascular Hemodynamics", Lawrence Livermore National Laboratory Computation Poster Symposium, April 2014. Best Poster.

 A. Randles, and E. Kaxiras, "Parallel in Time Approximation of the Lattice Boltzmann Method for Laminar Flows". Journal of Computational Physics, Volume 270 (2014): 577-586. PDF.

 A. Randles, E. Draeger, and F. Michor, ”Scaling the Lattice Boltzmann Method on Massively Parallel Systems.” SIAM Conference on Parallel Processing for Scientific Computing (SIAM PP14), Portland, Oregon, February 18-February 24, 2014.

 V. Almendro, Y.K. Chen,  A. Randles, M. Gonen, S. Itzkovitz, A. Marusyk, E. Ametller, X. Gonzalez-Farre, M. Munoz, H. Russnes, A. Helland, I. Rye, A.L. Borressen-Dale, R. Maruyam, A. van Oudenaarden, M. Dowsett, R. Jones, J. Reis-Fiho, P. Gascon, F. Michor, and K. Polyak. "Inference of Tumor Evolution during Chemotherapy by Computational Modeling and In Situ Analysis of Genetic and Phenotypic Cellular Diversity". Cell Reports (2014).  PDF.

2013
A. Randles, E. Draeger, E. Kaxiras, and F. Michor. "Massively Parallel Model of Cardiovascular Hemodynamics", Computational Aspects of Biological Information 2013 (CABI 2013), Cambridge, MA, December 16, 2013. Poster: PDF.

A. Randles, "Modeling cardiovascular hemodynamics using the lattice Boltzmann method on massively parallel supercomputers", PhD Dissertation, Harvard University, Cambridge MA. PDF.

 A. Peters Randles, V. Kale, J.R. Hammond, W. Gropp, and E. Kaxiras, "Performance analysis of the Lattice Boltzmann model beyond Navier-Stokes", Proceedings of the 27th IEEE International Parallel and Distributed Processing Symposium, IPDPS 13, 2013. PDF.

 A. Peters Randles, D. Rand, C. Lee, G. Morrisett, M. Nowak, and H. Pfister, "Massively Parallel Model of Extended Memory Use In Evolutionary Game Dynamics", Proceedings of the 27th IEEE International Parallel and Distributed Processing Symposium, IPDPS 13, 2013. PDF.

D.E. Keyes, L. Curfman McInnes, C. Woodward, W. Gropp, E. Myra, M. Pernice, J. Bell, J. Brown, A. Clo, J. Connors, E. Constantinescu, D. Estep, K. Evans, C. Farhat, A. Hakim, G. Hammond, G. Hansen, J. Hill, T. Isaac, X. Jiao, K. Jordan, D. Kaushik, E. Kaxiras, A. Koniges, K. Lee, A. Lott, Q. Lu, J. Magerlein, R. Maxwell, M. McCourt, M. Mehl, R. Pawlowski,  A. Peters Randles, D. Reynolds, B. Rivière, U. Rüde, T. Scheibe, J. Shadid, B. Sheehan, M. Shephard, A. Siegel, B. Smith, X. Tang, C. Wilson, and B. Wohlmuth, "Multiphysics simulations: Challenges and opportunities", International Journal of High Performance Computing Applications, vol. 27, pp. 4-83, 2013. PDF.

2012
A. Peters Randles, "Massively Parallel Model of Evolutionary Game Dynamics", ACM/IEEE International Conference for High Performance Computing, Networking, Storage, and Analysis (SC), Salt Lake City, Utah, November 10-16, 2012. ACM Student Research Competition. Poster: PDF.

A. Peters Randles, M. Baecher, H. Pfister, and E. Kaxiras. "A Lattice Boltzmann Simulation of Hemodynamics in a Patient-Specific Aortic Coarctation Model". STACOM 2012 Workshop, Held in Conjunction with MICCAI 2012, LNCS vol. 7746, Springer, 2012.

A. Peters Randles, V. Kale, W. Gropp, and E. Kaxiras, "Taking Fluid Models Beyond Navier-Stokes". DOE CSGF Annual Conference, July 2012. Poster: PDF.

2011
M. Borkin, K. Gajos, A. Peters, D. Mitsouras, S. Melchionna, F. Rybicki, C. Feldman, and H. Pfister. ”Evaluation of artery visualizations for heart disease diagnosis.” IEEE Transactions on Visualization and Computer Graphics (Proceedings of Information Visualization 2011), 17(12), December 2011. PDF.

B. Robson, J. Li, R. Dettinger, A. Peters, and S. K. Boyer, ”Drug discovery using very large numbers of patents: general strategy with extensive use of match and edit operations.” Journal of Computer-Aided Molecular Design, vol. 25, no. 5, pp. 427-441, 2011. PDF.

A. Peters, S. Melchionna, J. Latt, S. Succi, and E. Kaxiras, "Multiscale simulation of blood flow in the coronary arteries". DOE CSGF Annual Conference, July 2011. Poster: PDF.

A. Peters, L. Zeger, ”Efficient Resource Allocation for Broadcasting Multi-Slot Messages With Random Access with Capture”, Proceedings of IEEE Military Communications Conference (MILCOM), October 2011. PDF.

A. Peters, S. Melchionna, E. Kaxiras, J. Latt, J. Sircar, M. Bernaschi, M. Bisson, and S. Succi, ”Multiscale Simulation of Blood Flow in the Coronary Arteries.” SIAM CS&E Conference, Reno, Nevada, February 28-March 4, 2011.

2010
A. Peters, S. Melchionna, J. Latt, S. Succi, and E. Kaxiras, “Leveraging theory from cosmodynamics to study the the effect of the pulsating heart on coronary arteries in a large-scale Lattice Boltzmann simulation", Proceedings of the 63rd annual meeting of the APS Division of Fluid Dynamics, Long Beach, CA, November 21-23, 2010.

M. Borkin, A. Peters, D. Mitsouras, H. Pfister, and E. Kaxiras, "Simulated Blood Flow through a Patient's Coronary Arteries", Gallery of Fluid Motion, Proceedings of the 63rd annual meeting of the APS Division of Fluid Dynamics, November 21-23, 2010 in Long Beach, CA, USA. Poster: PDF.

A. Peters, S. Melchionna, E. Kaxiras, J. Latt, J. Sircar, M. Bernaschi, M. Bisson, and S. Succi, ”Multiscale simulation of cardiovascular flows on the IBM Bluegene/P: full heart-circulation system at red-blood cell resolution.” Proceedings of the 2010 ACM/IEEE International Conference for High Performance Computing, Networking, Storage, and Analysis (SC), New Orleans, LA. Gordon Bell Finalist. PDF.

A. Peters, D. Rand, J. Sircar, G. Morrisett, M. Nowak, and H. Pfister, "Leveraging GPUs for Evolutionary Game Theory". GPU Technology Conference, San Jose, CA, September 20-23, 2010.

S. Melchionna, J. Latt, E. Kaxiras, A. Peters, M. Bernaschi, and S. Succi, ”Endothelial Shear Stress From Large-Scale Blood Flow Simulations”, in Fifth European Conference on Computational Fluid Dynamics, 2010. PDF.

A. Peters, S. Melchionna, S. Succi, and E. Kaxiras, ”Leveraging Theory From Cosmodynamics for Multi-Scale Cardiovascular Simulation”, in Fifth European Conference on Computational Fluid Dynamics ECCOMAS CFD, 2010.
2009
A. Peters, G. Lakatos, M. Fyta, and E Kaxiras. "Massively Parallel Simulations of Large DNA Molecules Using the IBM Blue Gene Supercomputer". ACM/IEEE Conference on Supercomputing, Portland, Oregon, 14-20, 2009. SC '09. ACM, New York, NY. Poster: PDF.

M.Borkin, A. Peters, and S. Mandre. "A Numerical Model for Time-Dependent Gravity-Driven Flow in a Collapsible Tube", Poster, Proceedings of the 62nd Annual Meeting of the APS Division of Fluid Dynamics, Minneapolis MN, November 22-24, 2009. Poster: PDF.

A. Peters. "Model of Evolutionary Game Dynamics Accelerated by GPU Hardware". Poster. GPU Technology Conference, San Jose, CA, September 30-October 2, 2009. Poster.

2008
A. Peters, R. Dettinger, and M. Megerian. "Acceleration the Drug Discovery Process through Massively Parallel Computation and Data Integration". Poster. Grace Hopper Celebration. October 1-4, 2008, Keystone, CO. Poster.

Y.P. Pang, T. Mullins, B. Swartz, J. McAllister, B. Smith, C.J. Archer, R. Musselman, A. Peters, B. Wallenfelt, and K. Pinnow. ”EUDOC on the IBM Blue Gene/L system: Accelerating the transfer of drug discoveries from laboratory to patient”, IBM Journal of Research and Development, vol. 52, no. 1, Feb. 2008. PDF.

K. Jiang, O. Thorsen, A. Peters, B. Smith, and C. P. Sosa, "An Efficient Parallel Implementation of the Hidden Markov Methods for Genomic Sequence-Search on a Massively Parallel System". IEEE Transactions in Parallel Distributed Systems, Vol 19, no. 1, 2008. PDF.

A. Peters, A. King, T. Budnik, P. J. McCarthy, and P. Michaud, “Asynchronous task dispatch for high throughput computing for the eServer IBM Blue Gene® Supercomputer,” in the Proceedings of the IEEE International Symposium on Parallel and Distributed Computing, 2008. PDF.
2007
A. Peters, et al. "High Throughput Computing Validation for Drug Discovery using the DOCK Program on a Massively Parallel System". 1st Annual MSCBB, Northwestern University, Evanston, IL, September 2007. Poster.

O. Thorsen, K. Jiang, A. Peters, M. Lundberg, and C. Sosa. "Next Generation of Selected Bioinformatics Applications Using Massively Parallel Supercomputers". 1st Annual MSCBB, Northwestern University, Evanston, IL, September 2007. Poster.

A. Peters. "Drug Discovery on Blue Gene/L: The Integration of Massively Parallel Computation and Textual Annotation for Virtual Screening". IBM Early Career Conference, Armonk, NY, September 2007. Poster.

O. Thorsen, K. Jiang, A. Peters, B. Smith, H. Lin, W. Feng, C. P. Sosa, "Parallel Genomic Sequence-Search on a Massively Parallel System", ACM International Conference on Computing Frontiers, May 2007. PDF.

A. Peters. "High Throughput Computing on Blue Gene", Paradyn / Condor Week, University of Wisconsin, Madison, Wisconsin April 30-May 3, 2007. Slides: PDF.

2006
Y.P. Pang, B. Swartz, B. Smith, T. Mullins, A. Peters, and R. Musselman. "Optimizing EUDOC for the IBM eServer Blue Gene Supercomputer". ACM/IEEE International Conference for High Performance Computing, Networking, Storage, and Analysis (SC), Tampa, FL, 2006. Poster.

K. Pinnow, R. Musselman, A. Peters, and B. Swartz. "Blue Gene Application Performance Optimization". ScicomP12-SP-XXL, 2006. Poster.
2005
A.E. Peters, M. E. Gehm, B. D. Guenther, and D. J. Brady, ” Multiplex Design for High-Performance Microspectrometers,” in Adaptive Optics: Analysis and Methods/Computational Optical Sensing and Imag- ing/Information Photonics/Signal Recovery and Synthesis Topical Meetings (COSI), 2005. Poster.

Selected U.S. Patents

I currently have 100 issued U.S. Patents and 133 patent applications filed with the U.S. Patent Office.  These are all primarily in the field of parallel computing.  A selection is listed below.  See CV for full listing.

 1. Management of persistent memory in a multi-node computer system, E. Barsness, D.L. Darrington, A. Peters, and J.M. Santosuosso. U.S. Patent No. 8,812,818, August 19, 2014.

2. Parsing an application to nd serial and parallel data segments to minimize mitigation overhead between serial and parallel compute nodes, E. Barsness, D.L. Darrington, A. Peters, and J.M. Santosuosso. U.S. Patent No. 8,595,736, November 26, 2013.

3. Sharing compiler optimizations in a multi-node system, E. Barsness, D. Darrington, A. Peters, and J. Santosuosso. U.S. Patent No. 8,122,441, February 21, 2012.

4. Process migration based on service availability in a multi-node environment , E. Barsness, D. Darrington, A. Peters, and J. Santosuosso. U.S. Patent No. 8,112,526, February 7, 2012.

5. Managing database resources used for optimizing query execution on a parallel computer system, E. Barsness, D. Darrington, A. Peters, and J. Santosuosso. U.S. Patent No. 8,095,512, January 10, 2012.

6. Index maintenance in a multi-node database, E. L. Barsness, D. L. Darrington, A. Peters, and J. M. Santosuosso, U.S. Patent 8,090,710, January 3, 2012.

7. Distribution of join operations on a multi-node computer system, E. L. Barsness, A. Peters, and J. M. Santosuosso. U.S. Patent 8,055,651, November 8, 2011.

8. Distribution of join operations on a multi-node computer system, E. L. Barsness, A. Peters, and J. M. Santosuosso. United States Patent: 8,055,651, Novemer 8, 2011.

9. Tracking network contention, C. J. Archer, A. Peters, B. E. Smith, and B. A. Swartz. U.S. Patent No. 8,055,879, November 8, 2011.

10. Managing database resources used for optimizing query execution on a parallel computer system , C. J. Archer, M. A. Blocksome, A. Peters, J. D. Ratterman, and B. E. Smith. U.S. Patent No. 8,041,969, October, 18, 2011.

11. Query governor with network monitoring in a parallel computer system, E. L. Barsness, D. L. Darrington, A. Peters, and J. M. Santosuosso. U.S. Patent 8,037,184, October 11, 2011.

12. Method and apparatus for routing data in an inter-nodal communications lattice of a massively parallel computer system by dynamic global mapping of contended links, C. J. Archer, R. G. Musselman, A. Peters, K. W. Pinnow, B. A. Swartz, and B. P. Wallenfelt. U.S. Patent 8031614, October 4, 2011.

13. Nodal data normalization, E. L. Barsness, A. Peters, and J. M. Santosuosso. U.S. Patent 8,027,972, Septem- ber 27, 2011.

14. Commitment control for less than an entire record in an in-memory database in a parallel computer system, E. L. Barsness, A. Peters, and J. M. Santosuosso. U.S. Patent 8,027,996, September 27, 2011.

15. Re-executing launcher program upon termination of launched programs in MIMD mode booted SIMD par- titions , T. A. Inglett, P. J. McCarthy, A. Peters, T. A. Budnik, M. B. Mundy, and G. G. Stewart. U.S. Patent 7,979,674, July 12, 2011.

Technical Reports and Other

A. Peters, S. Melchionna, E. Kaxiras et al. (2010) Jülich Blue Gene/P Extreme Scaling Workshop 2010: Full Scale Simulation of Coronary Arteries in Presence of Red Blood Cells, 23-26. PDF.

A. Peters, D. Rand, M. Nowak et al. (2009) Jülich Blue Gene/P Extreme Scaling Workshop 2009: PEBS: Parallel Evolutionary Biology Suite, 14-16. PDF.

A. Peters, et al".High Throughput Computing Validation for Drug Discovery Using the DOCK Program on a Massively Parallel System", Redpaper 4410, Poughkeepsie, NY, April, 16 2008. PDF .

Invited Talks
Quantitative Biology: From Molecules to Man, New York, NY,  June 2015.
University of Texas at Austin, Department of Aerospace and Engineering Mechanics, Austin, TX, March 2015.
Northeastern University, Department of Bioengineering, Boston, MA, March 2015.
Workshop on Spatiotemporal Dynamics of Single Cell Trafficking, University of Southern California, Los Angeles, CA, February 2015.
TTI Vanguard, Biotech and Beyond, San Diego, CA, February 2015.
University of Southern California, Department of Aerospace and Mechanical Engineering, Los Angeles, CA, February 2015.
University of California San Diego, Department of Computer Science and Engineering, San Diego, CA, January 2015.
Duke University, Department of Biomedical Engineering, Durham, NC, January 2015.
University of California San Diego, Department of Mechanical and Aerospace, Engineering, San Diego, CA, January 2015.
November 2014, Massachusetts Institute of Technology, Cambridge, MA
Computing Research In Boston and Beyond, Massachusetts Institute of Technology, Cambridge, MA, November 2014.
Big Ideas for Busy People, Cambridge Science Festival, Cambridge, MA, April 2014.
Georgia Institute of Technology, School of Computational Science, Atlanta, GA, March 2013.
GE Global Research Center, Niskayuna, NY, February 2013.
Lawrence Livermore National Laboratory, February 2013.
Lawrence Berkeley National Laboratory, Computational Research Division, January 2013.
MIT, Harvard-MIT Biomedical Engineering Center, December 2012.
Intel Corporation, Santa Clara, CA, December 2012.
Dana-Farber Cancer Institute, Cambridge, MA, December 2012.
George Michael Fellowship Talk, ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis, Seattle, WA, November 2011.
Brown University, Division of Applied Mathematics, May 2011.